Ricopili is a tool for visualizing regions of interest in select GWAS data sets.
The following data sets are currently available for free access (click the consortium name for more information, the journal for the publication):
- Schizophrenia, PGC - Psychiatric Genetics Consortium (Nature, 2022)
- Bipolar disorder, PGC - Psychiatric Genetics Consortium (Nature Genetics, 2011)
- Major depressive disorder, PGC - Psychiatric Genetics Consortium (Molecular Psychiatry, 2012)
- ADHD, PGC - Psychiatric Genetics Consortium (JAACAP, 2010)
- Psychiatric Cross Disorder Analysis, PGC - Psychiatric Genetics Consortium (The Lancet, 2013)
- Inflammatory Bowel Disease, International IBD Genetics Consortium (Nature, 2012)
- Host control of HIV-1, International HIV Controllers Study (Science, 2010)
- GWAS, Tobacco and Genetics (TAG) Consortium (Nature Genetics, 2010)
- GWAS, rheumatoid arthritis risk: public download (Nature Genetics, 2010)
- Antidepressant Efficacy in Major Depressive Disorder (Pharmacogenetics — PhaCoGe): (The American Journal of Psychiatry, 2013)
Many more are available as whole-genome downloads: PGC public downloads
How it works
Choose a data set and enter a genomic location or a gene name in the form below. A .pdf plot will be generated, along with a text file of single-SNP results. You can also set:
- Clumping — independent regions are colored differently to highlight LD. If you request more than one clump, make sure at least one SNP passes the p-value threshold you specify.
- Index SNP — SNPs in the region are colored by LD to this variant.
- Anonymity — frequency information comes from HapMap to protect anonymity.
- NHGRI results — results from the NHGRI GWAS catalog are overlaid on the plot.
This tool is in ongoing development and should be considered beta. If the server doesn't respond, please try again shortly, and contact us with any problems or suggestions.